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Code Listing by Hadoop-bam

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Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools in the vein of SAMtools.

The file formats currently supported are BAM, SAM, FASTQ, FASTA, and QSEQ.

For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in...