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Code Listing by M. A Balafar

Code 1-5 of 5   






[Jaccard,Dice,rfp,rfn]=sevaluate(m,o)
gets label matrix for one tissue in segmented and ground truth
and returns the similarity indices
m is a tissue in gold truth
o is the same tissue in segmented image
rfp false pasitive ratio
rfn false negative ratio



get address of the files downloaded from IBSR website and return image and ground truth for nth image from 20 normal images

[q,i]=IBSRread(am,ai,n)
am is address of manual segmented image. For example 'C:20Normals_T1_seg'
ai...



Brainwebread(am,ai)
get address of the files downloaded from Brainweb website http://www.cma.mgh.harvard.edu/ibsr/
and return matrix representing image and ground truth segmentation
am is address of manual segmented image. For...



It is very fast and simple file to display histogram of a 3D image
imhist3(I,n) n is the number of bins in the histogram
imhist3(X,map) X isindexed 3D image and map is colormap map



I=Maxin(I,n,f)
I is input 3D image
n is neighbourhood size. for example 3 for 3*3
f=1 for max filter
f=0 for min filter