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Code Listing by Rex Cheung

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This program allows users to specify the number of zero layers to wrap around a 3D image matrix.
Zero padding allows image processing to occur at the edges of the 3D image. Many image processing filters take into account the values stored in a neighborhood of voxels being evaluated. Therefore, if not zero-padded, the image processing will not work correctly at the edge voxels.



This program plots the deformation field (displace vectors) contained in vector.txt.
This producted by ITK image registration programs. Check the ITK output format of the registration program you are using and modify the fscanf line...



This program allows users to view the cross-sectional view of a CT or MRI volume image.
It could easily be extened to see the coronal and sagittal plane images. Please modify the voxel depth, x, y and z dimensions for your image.



This filter could be extended into a 2D image smoothing filter. The kernel can be switched easily.
This is a program to test how a gaussian filter works on a set of 1-D data a
e.g. a=[1 10 1 10 1 10 1] --- use this as input or use your...



This allow you to adjust the parameters needed for ITK bias correction.
Please download bias field correctors from ITK. This wrapper will simplify your life in using the multi-parameter bias field corrector.



This is the 3D version of the earlier 2D version. It will be used for contour-guided deformation reg



This program uses Matlab cellular modules to outline the a workflow of 2D deformable registration.
This program adapting InSPIRE modules into a full 2D workflow for manual landmark-based deformable image registration. I provided some to the...



This is a part of InSPIRE for checking the similarity of two figures possibly after registration.
This provides the users a way to display moving and fixed images in a checker-board pattern. When alpha1=1 and alpha2=0, this program returns...



Rigid transform to precondition registration
Please download from earlier InSPIRE packages in Matlab Central



This m-script slices 3D image file in MovingMask.raw in 2D images.