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Code Listing by Simon Robinson

Code 1-4 of 4   






The main features of this B0 field mapping (FM) toolbox are described
in Robinson and Jovicich (MRM, 2011). In brief, they are
i) combination of phase information from multi-channel coils using the
Hermitian inner Product (HP) method, the Phase Match (PM) method or
the Separate Channel (SC) method.
ii) field map denoising either via the median replacement of outliers
or via the standard deviation over RF channels...



M-file with a short section for user-defined parameters, specifying the directory in which images are stored and the pattern to be used to select them. The pattern can either be first image number, interval, last image number, or images can be...



A very simple program to convert a time in seconds to a string giving the time in hours, minutes and seconds. Useful for producing readable toc output from programs which run for ages.



help secs2hms
SECS2HMS - converts...



Conceived for functional Magnetic Resonance Imaging, create_mosaic may also be useful for DWI or other applications which create image time-series

Most fMRI programs use 4D matrices (x,y,z,t) in NIfTI format.
It can be useful to...