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Code Listing by Steinar Thorvaldsen

Code 1-4 of 4   






Performs Mantel-Haenszel's test for k strata of 2x2 tables.
Mantel and Haenszel proposed this asymptotic test based on the chi-2 distribution. Assuming no three-way interaction (k independent strata).

Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/

Input:
X: data matrix (size 2x2xK) of the observed frequency cells, (a,b,c,d) for each stratum k.
tail: desired test ('lt' or 'gt':...



Chi-square tests of homogeneity and independence.
Computes the P-value for I x J - table row/col independence.
Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/
Input:
X: data matrix (I x J -table) of...



It is a non-parametric statistical test for discrete data used to
determine if there are nonrandom associations between the two variables.
Mid-P values are a reasonable compromise between the conservativeness of
the ordinary exact...



A cumulative Mann-Kendall trend test.
Calculating p-values for monotonic trend of ordinal data sequences
(e.g. proteins) by a compound test based on Kendall's rank correlation.
Ref.: The DeltaProt toolbox at...