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Only in very simple situations can we describe the correlation between two time series as a single number. Often it varies both as a function of time, and of wavelength. Datasets may be uncorrelated on short timescales due to noise, but strongly correlated on larger wavelengths (eg annual).

This program will compute (using wavelets) the correlation as a function of both time and wavelength. Anticorrelation (s=-1) is displayed in...

Semi Automatic brain masking for MRI volumes;
Uses thresholding, erosion, dilation and overlap between slices for semi-automated masking of MRI brain datasets.

SeriesDate: '20070101'
SeriesTime: '120000.000000'
Modality: 'MR'

datasets(1).Filenames =

This class abstracts database standard operations into a MATLAB class. All that is required is a correctly formatted connection string. The class uses under the hood the database machinery of the .NET framework.

Query results are...

The MIRIAD-Ruby package makes MIRIAD datasets accessible from Ruby by wrapping the MIRIAD UVIO routines and makes Ruby usable with MIRIAD datasets by adding convenience, utility, and astronomy related methods to Ruby classes.

Performs rigid and non-rigid registration of point-sets using graph-based representations.
Point-set registration methods using the EM algorithm and Softassign that exploits geometric and structural evidence.

The code contains...

Gruff is a beautiful graphing library for Ruby using RMagick. Plot multiple datasets in color or implement your own colorful theme. Homepage at, Git source at

This function allows to use two different y-axes with the same data in one plot. Note, that only one curve but in two different units is shown. This is the difference to plotyy which plots two different datasets into one figure.

Take a...

Extract specific Channels from BIOSEMI DATA FILE (BDF)
Function reads in BDF data format and rewrites the specified channels to file. This has proven useful with very large datasets (e.g. high sampling frequencies) that must circumvent memory...

The Bioinformatic Software Bench for Drupal allows for a rapid and secure deployment of bioinformatic software. The BLAST, InterProScan, SSAHA2 and annot8r software are provided by default and plugins for new software can be readily written. An...

This is an implementation of part of Kanan & Cottrell (2010), which extracts dense features from color images which can then be used for object or face classification. In our experiments they perform quite well, generally about as well as SIFT...

A Ruby extension that provides a 2-Layer Back Propagation Neural Network, which can be used to categorize datasets of arbitrary size. The network can be easily (re-)stored to/from the hard disk.

Chronoscope is a visualization platform under development at Timepedia for time series datasets. Chronoscope stems from a desire for responsiveness and interactivity when navigating or authoring datasets.

Features:- Support for very...

Run "parrecreader.m"

This program reads the native PAR/REC files, imports them to Matlab workspace and displays them.

This is a stripped down version of code developed for MR Elastography purposes, but should be...

Covariance NMR toolbox, version 1.1 (C) (2010)

David A. Snyder(1) along with Timothy Short(1), Leigh Alzapiedi(1) and Rafael Bruschweiler (2)

(1) Department of Chemistry, College of Science and Health, William Paterson...

x-y scatter plot with plot symbol size proportional to magnitude of z. Scale factor enables symbol size continuity when overplotting with subsequent datasets using a different color.

DbUnit is a JUnit extension (also usable with Ant) targeted for database-driven projects that, among other things, puts your database into a known state between test runs.

This is an excellent way to avoid the myriad of problems that...

LC_FAST calculates how many times a given input signal crosses a set of levels.
It is much faster than traditional algorithms being designed to handle big datasets.

surface2vtk. Given the scattered data r and its co-ordinates x,y,z,
surface2vtk interpolates the data to a regular grid and saves the
resulting surface as a vtk file
e.g. surface2vtk(x,y,z,r,'surface.vtk')

For info...

Fitting a t-copula using the method of moments described in Quantitative Risk Management by McNeil, Frey and Embrechts. The outputs from this function correspond to those of the statistics toolbox's copulafit('t',u) . For large datasets,...