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Similarity index for genetic band profiles 1.0
File ID: 85469






Similarity index for genetic band profiles 1.0
Download Similarity index for genetic band profiles 1.0http://www.mathworks.comReport Error Link
License: Shareware
File Size: 10.0 KB
Downloads: 3
Submit Rating:
Similarity index for genetic band profiles 1.0 Description
Description: This script executes some basic calculations from the following article.

Leonard AC, Franson SE, Hertzberg VS, Smith MK & Toth GP (1999) Hypothesis testing with the similarity index. Molecular Ecology 8: 2105-2114.

Please consult this article for any conceptual or mathematical details.

The script calculates the mean similarity index (S) and its variance for a given set of individual genetic band profiles.

The input is a single matrix (*.txt) of which each row is a sample (genetic profile) and each column is a bin (genetic marker).

For example, the following data...

Markers: a b c d e f
Individual 1: 0 0 0 1 1 1
Individual 2: 0 0 1 0 1 0
Individual 3: 0 0 . . 0 0
Individual 4: 1 0 0 1 0 1

is entered as...

0 0 0 1 1 1
0 0 1 0 1 0
0 0 NaN NaN 0 0
1 0 0 1 0 1

and yields a mean S of 0.1778 and variance of 0.0316, when the script is run.

License: Shareware

Related: Input, Single, Matrix, profiles, Genetic, variance, Individual, Sample

O/S:BSD, Linux, Solaris, Mac OS X

File Size: 10.0 KB

Downloads: 3



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