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Can be applied to relatively large numbers (Total<30000)
G: total number of genes in the genome
C: total number of genes in a gene list
T: total number of genes of a gene function term
t: the common genes of the gene list and the gene function
return: log(p-value)

Reference:
Meng, J., Gao, S. & Huang, Y. Enrichment constrained time-dependent clustering analysis for finding meaningful temporal...



Script to enumerate the members of groups in the domain.



INPUT: N the number of elements in the set to be partitioned
OUTPUT: a matrix whose element (i,j) is S(i,j)



The objective of this project is the advancement of Diplomacy in the electronic realm by producing an XML Diplomacy data standard and a suite of server and client tools to facilitate Diplomacy play over the internet.



A context manager and decorator that wrap common exception trapping and handling code so they may be applied with just a single line of code in the client.



This recipe can be good to avoid some limitations of multiple inheritance, when in need to expand functionalities of superclasses in the hierarchy or controlling the classes cooperation.



Handles logic for detecting straights and groups of repeats in the presence of wildcards and hands with more than five cards.



Python port of a very popular implementation of
text2pdf in the C programming language. I ported this
to python because it could be used as a script instead
of executable which is the case with the original program.
Most of the...



Given the number of literals and clauses, returns a randomly generated
3-CNF sentence composed of clauses in the form of lists of tuples.
The first number in the tuple is the literal; the second number is its truth value.



In Evolutionary Multiobjective Optimization (EMO), an algorithm produces a set of points in the performance space as an estimation of the Pareto front. A quantitive measure is desired to estimate the closeness of the estimated data points to the...



Analysis and simulation of orbits in the circular-restricted three-body problem (CRTBP), where primary and secondary bodies move in circular orbits about the common center of mass, and effect of gravitational attraction of the smallest body are...



This program implements the iterative algorithm in Khachiyan's paper "Rounding of Polytopes in the Real Number Model of Computation" to approximate the minimum volume ellipsoid circumscribing a non-degenerate set of points in arbitrary...



The current Javanese calendar was inaugurated by Sultan Agung of Mataram in the Gregorian year 1633. It is based on a combination of the Hindu calendar "Saka" and the Islamic calendar based on the lunar month, and contains different...



This interface accompanies a paper presented at the Conference of Optimization in the United Arab Emirates on Feb. 2, 2005.

The GUI is an interface to a collection of functions which perform all the operations discussed in the paper.



To run the GUI we need to unzip the content of archive in the current Matlab Directory. Run M-file and chose to display Time Evolution versus Probability Density for fixed year and banc.



The collection of functions in the NaN Suite enhances the functionality of the original 'nan'-functions in the Statistics Toolbox for N-D matrices. In addition, the new function nansem.m calculates the standard error of the mean ignoring NaNs.



function mHist = hist2d ([vY, vX], vYEdge, vXEdge)
2 Dimensional Histogram
Counts number of points in the bins defined by vYEdge, vXEdge.
size(vX) == size(vY) == [n,1]
size(mHist) == [length(vYEdge) -1, length(vXEdge) -1]
...



Just pass the dissimilarity matrix, number of clusters in the partition to be evaluated and the indexes for each data point and you will get the Dunn's index.

The Dunn's index measures compactness (Maximum distance in between data...



Given an open Simulink model, Log_Signals allows you specify a list of signals in the diagram that you want to log. Optionally, there are flags that let you select "all" or "none".

This script just saves you the...



A MATLAB software that shows the position and relative brightness of stars in the sky
The software provides the sky map (position and relative brightness of stars in the sky) for any given location of observation on Earth, and time as the...